data base set - PMC

Nithin Sam Ravi, Beeke Wienert, Stacia K Wyman, Henry William Bell, Anila George, Gokulnath Mahalingam, Jonathan T Vu, Kirti Prasad, Bhanu Prasad Bandlamudi, Nivedhitha Devaraju, Vignesh Rajendiran, Nazar Syedbasha, Aswin Anand Pai, Yukio Nakamura, Ryo Kurita, Muthuraman Narayanasamy, Poonkuzhali Balasubramanian, Saravanabhavan Thangavel, Srujan Marepally, Shaji R Velayudhan, Alok Srivastava, Mark A DeWitt, Merlin Crossley, Jacob E Corn, Kumarasamypet M Mohankumar

eLife. 2022; 11: e65421. Published online 2022 Feb 11. doi: 10.7554/eLife.65421

PMCID:: PMC8865852

Article PDF–4.8M

Select item 86496587.

Multivariate Analysis and Validation of the Prognostic Factors for Skull Base Chordoma

Chubei Teng, Qi Yang, Zujian Xiong, Ningrong Ye, Xuejun Li

Front Surg. 2021; 8: 764329. Published online 2021 Nov 23. doi: 10.3389/fsurg.2021.764329

PMCID:: PMC8649658

Article PDF–1.7M

Select item 92329358.

Base editing sensor libraries for high-throughput engineering and functional analysis of cancer-associated single nucleotide variants

Francisco J. Sánchez-Rivera, Bianca J. Diaz, Edward R. Kastenhuber, Henri Schmidt, Alyna Katti, Margaret Kennedy, Vincent Tem, Yu-Jui Ho, Josef Leibold, Stella V. Paffenholz, Francisco M. Barriga, Kevan Chu, Sukanya Goswami, Alexandra N. Wuest, Janelle M. Simon, Kaloyan M. Tsanov, Debyani Chakravarty, Hongxin Zhang, Christina S. Leslie, Scott W. Lowe, Lukas E. Dow

Nat Biotechnol. Author manuscript; available in PMC 2022 Aug 14.

Published in final edited form as: Nat Biotechnol. 2022 Jun; 40(6): 862–873. Published online 2022 Feb 14. doi: 10.1038/s41587-021-01172-3

PMCID:: PMC9232935

Article PDF–5.8M

Select item 66480649.

Estimating Strengths of Individual Hydrogen Bonds in RNA Base Pairs: Toward a Consensus between Different Computational Approaches

Antarip Halder, Dhruv Data, Preethi P. Seelam, Dhananjay Bhattacharyya, Abhijit Mitra

ACS Omega. 2019 Apr 30; 4(4): 7354–7368. Published online 2019 Apr 23. doi: 10.1021/acsomega.8b03689

PMCID:: PMC6648064

Article PDF–1.9M

Select item 646700910.

Going beyond base-pairs: topology-based characterization of base-multiplets in RNA

Sohini Bhattacharya, Ayush Jhunjhunwala, Antarip Halder, Dhananjay Bhattacharyya, Abhijit Mitra

RNA. 2019 May; 25(5): 573–589. doi: 10.1261/rna.068551.118

PMCID:: PMC6467009

Article PDF–8.1M

Select item 1063904811.

In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells

Jacob P Sieg, Elizabeth A Jolley, Melanie J Huot, Paul Babitzke, Philip C Bevilacqua

Nucleic Acids Res. 2023 Nov 10; 51(20): 11298–11317. Published online 2023 Oct 19. doi: 10.1093/nar/gkad807

PMCID:: PMC10639048

Article PDF–2.0M

Select item 794079812.

Replacing thymine with a strongly pairing fifth Base: A combined quantum mechanics and molecular dynamics study

Mohit Chawla, Suresh Gorle, Abdul Rajjak Shaikh, Romina Oliva, Luigi Cavallo

Comput Struct Biotechnol J. 2021; 19: 1312–1324. Published online 2021 Feb 23. doi: 10.1016/j.csbj.2021.02.006

PMCID:: PMC7940798

Article PDF–3.3M

Select item 909818013.

Energy Landscapes for Base-Flipping in a Model DNA Duplex

Nicy, Debayan Chakraborty, David J. Wales

J Phys Chem B. 2022 Apr 28; 126(16): 3012–3028. Published online 2022 Apr 15. doi: 10.1021/acs.jpcb.2c00340

PMCID:: PMC9098180

Article PDF–3.7M

Select item 983133914.

The effects of base rate neglect on sequential belief updating and real-world beliefs

Brandon K. Ashinoff, Justin Buck, Michael Woodford, Guillermo Horga

PLoS Comput Biol. 2022 Dec; 18(12): e1010796. Published online 2022 Dec 22. doi: 10.1371/journal.pcbi.1010796

PMCID:: PMC9831339

Article PDF–2.9M

Select item 543585715.

Structural landscape of base pairs containing post-transcriptional modifications in RNA

Preethi P. Seelam, Purshotam Sharma, Abhijit Mitra

RNA. 2017 Jun; 23(6): 847–859. doi: 10.1261/rna.060749.117

PMCID:: PMC5435857

Article PDF–1.7M

Select item 592094416.

RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview

Jiří Šponer, Giovanni Bussi, Miroslav Krepl, Pavel Banáš, Sandro Bottaro, Richard A. Cunha, Alejandro Gil-Ley, Giovanni Pinamonti, Simón Poblete, Petr Jurečka, Nils G. Walter, Michal Otyepka

Chem Rev. 2018 Apr 25; 118(8): 4177–4338. Published online 2018 Jan 3. doi: 10.1021/acs.chemrev.7b00427

PMCID:: PMC5920944

Article PDF–77M

Select item 772165117.

Base editing: advances and therapeutic opportunities

Elizabeth M. Porto, Alexis C. Komor, Ian M. Slaymaker, Gene W. Yeo

Nat Rev Drug Discov. Author manuscript; available in PMC 2021 Dec 1.

Published in final edited form as: Nat Rev Drug Discov. 2020 Dec; 19(12): 839–859. Published online 2020 Oct 19. doi: 10.1038/s41573-020-0084-6

PMCID:: PMC7721651

Article PDF–1.8M

Select item 654063618.

Surgery of the lateral skull base: a 50-year endeavour

E. ZANOLETTI, A. MAZZONI, A. MARTINI, R.V. ABBRITTI, R. ALBERTINI, E. ALEXANDRE, V. BARO, S. BARTOLINI, D. BERNARDESCHI, R. BIVONA, M. BONALI, I. BORGHESI, D. BORSETTO, R. BOVO, M. BREUN, F. CALBUCCI, M.L. CARLSON, A. CARUSO, P. CAYÉ-THOMASEN, D. CAZZADOR, P.-O. CHAMPAGNE, R. COLANGELI, G. CONTE, D. D’AVELLA, G. DANESI, L. DEANTONIO, L. DENARO, F. DI BERARDINO, R. DRAGHI, F.H. EBNER, N. FAVARETTO, G. FERRI, A. FIORAVANTI, S. FROELICH, A. GIANNUZZI, L. GIRASOLI, B.R. GROSSARDT, M. GUIDI, R. HAGEN, S. HANAKITA, D.G. HARDY, V.C. IGLESIAS, S. JEFFERIES, H. JIA, M. KALAMARIDES, I.N. KANAAN, M. KRENGLI, A. LANDI, L. LAUDA, D. LEPERA, S. LIEBER, S.L.K. LLOYD, A. LOVATO, F. MACCARRONE, R. MACFARLANE, J. MAGNAN, L. MAGNONI, D. MARCHIONI, J.P. MARINELLI, G. MARIONI, V. MASTRONARDI, C. MATTHIES, D.A. MOFFAT, S. MUNARI, M. NARDONE, R. PARESCHI, C. PAVONE, E. PICCIRILLO, G. PIRAS, L. PRESUTTI, G. RESTIVO, M. REZNITSKY, E. ROCA, A. RUSSO, M. SANNA, L. SARTORI, M. SCHEICH, W. SHEHATA-DIELER, D. SOLOPERTO, F. SORRENTINO, O. STERKERS, A. TAIBAH, M. TATAGIBA, G. TEALDO, D. VLAD, H. WU, D. ZANETTI

Acta Otorhinolaryngol Ital. 2019 Jun; 39(3 Suppl 1): S1–S146. doi: 10.14639/0392-100X-suppl.1-39-2019

PMCID:: PMC6540636

Article PDF–2.1M

Select item 963622619.

Base-editing-mediated dissection of a γ-globin cis-regulatory element for the therapeutic reactivation of fetal hemoglobin expression

Panagiotis Antoniou, Giulia Hardouin, Pierre Martinucci, Giacomo Frati, Tristan Felix, Anne Chalumeau, Letizia Fontana, Jeanne Martin, Cecile Masson, Megane Brusson, Giulia Maule, Marion Rosello, Carine Giovannangeli, Vincent Abramowski, Jean-Pierre de Villartay, Jean-Paul Concordet, Filippo Del Bene, Wassim El Nemer, Mario Amendola, Marina Cavazzana, Anna Cereseto, Oriana Romano, Annarita Miccio

Nat Commun. 2022; 13: 6618. Published online 2022 Nov 4. doi: 10.1038/s41467-022-34493-1

PMCID:: PMC9636226

Article PDF–6.0M

Select item 1046813820.

A temperature-tolerant CRISPR base editor mediates highly efficient and precise gene editing in Drosophila

Roman M. Doll, Michael Boutros, Fillip Port

Sci Adv. 2023 Sep; 9(35): eadj1568. Published online 2023 Aug 30. doi: 10.1126/sciadv.adj1568

PMCID:: PMC10468138

Article PDF–2.4M

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